PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123675001
Common NameGSBRNA2T00123675001, LOC106384316, LOC106393573
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 121aa    MW: 13408.6 Da    PI: 9.368
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.62.7e-4051041100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+kdC+++pyfp ++p+kfa++h+++Ga nv+k+l++lp ++r +a++sl +eA++r++dPvyG+vg+i+ lq q++++
  GSBRNA2T00123675001   5 RCAACKYLRRKCPKDCIFSPYFPPSDPHKFACIHRIYGAGNVSKMLQQLPVQTRAEAVESLSFEAKCRVDDPVYGCVGIISLLQTQIQKT 94 
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++ la++++e
  GSBRNA2T00123675001  95 QTLLAKTQAE 104
                          ***9999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.7924105IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-395102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MNPKRCAACK YLRRKCPKDC IFSPYFPPSD PHKFACIHRI YGAGNVSKML QQLPVQTRAE  60
AVESLSFEAK CRVDDPVYGC VGIISLLQTQ IQKTQTLLAK TQAEIAVAQT KHSQHTNLST  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123675001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738471e-118AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds.
GenBankDQ0566091e-118DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013679756.14e-86PREDICTED: LOB domain-containing protein 24-like
RefseqXP_013689715.14e-86PREDICTED: LOB domain-containing protein 24-like
SwissprotP594681e-74LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A078CL064e-86A0A078CL06_BRANA; BnaC03g38310D protein
STRINGAT3G26660.13e-72(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.16e-63LOB domain-containing protein 24
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]